STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2175Hypothetical protein; KEGG: fal:FRAAL0176 putative membrane transport protein. (284 aa)    
Predicted Functional Partners:
Noca_2176
PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro11274 possible repressor protein, helix-turn-helix family.
       0.508
Noca_0969
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL1680 hypothetical protein; putative membrane protein; putative HPr serine phosphorylation domain.
 
 
 0.497
Noca_0099
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: rha:RHA1_ro02908 possible ABC sugar transporter, substrate binding component; TC 3.A.1.2.-.
  
     0.494
Noca_4242
PFAM: MMPL domain protein; KEGG: fal:FRAAL1424 putative integral membrane export protein.
  
   0.491
Noca_0604
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: fal:FRAAL2528 hypothetical protein; TC 3.A.1.2.-.
  
     0.489
Noca_0144
PFAM: MMPL domain protein; KEGG: nfa:pnf2660 hypothetical protein.
  
   0.475
Noca_2864
PFAM: MMPL domain protein; KEGG: rha:RHA1_ro05027 membrane protein.
  
   0.456
Noca_0679
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: hso:HS_0765 ABC-type sugar-binding periplasmic protein; TC 3.A.1.2.-.
  
     0.447
Noca_3502
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06636 multidrug resistance transporter, MFS superfamily.
  
     0.446
Noca_4492
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 putative transmembrane efflux protein.
  
     0.444
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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