STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2182PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Noca_2183
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding.
 
    0.730
Noca_2181
PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein.
  
    0.726
Noca_2184
KEGG: sco:SCO4433 integral membrane protein.
  
    0.600
Noca_0576
Protein of unknown function DUF1486; PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; protein of unknown function DUF1486; KEGG: nfa:nfa29880 hypothetical protein.
 
    0.531
Noca_2180
KEGG: sco:SCO0502 hypothetical protein.
       0.459
Noca_2185
PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein.
       0.457
Noca_2186
PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match).
       0.446
Noca_2688
PFAM: aldo/keto reductase; KEGG: sco:SCO7356 oxidoreductase.
  
  
 0.423
Noca_1341
PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: sco:SCO3798 possible chromosome condensation protein; Belongs to the pirin family.
 
  
 0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.