STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2184KEGG: sco:SCO4433 integral membrane protein. (117 aa)    
Predicted Functional Partners:
Noca_2186
PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match).
 
    0.712
Noca_2185
PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein.
       0.631
Noca_2183
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding.
     
 0.612
Noca_2182
PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein.
  
    0.594
Noca_2181
PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein.
       0.498
Noca_2187
KEGG: fal:FRAAL6463 hypothetical protein.
       0.446
Noca_2188
Hypothetical protein.
       0.446
Noca_1196
PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein.
  
     0.441
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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