Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2184KEGG: sco:SCO4433 integral membrane protein. (117 aa)    
Predicted Functional Partners:
Noca_2186
PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match).
 
    0.711
Noca_2185
PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein.
       0.631
Noca_2183
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding.
     
 0.617
Noca_2182
PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein.
  
    0.600
Noca_0998
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase.
   
  0.506
Noca_2181
PFAM: NmrA family protein; KEGG: lxx:Lxx16700 hypothetical protein.
       0.498
Noca_2187
KEGG: fal:FRAAL6463 hypothetical protein.
       0.446
Noca_2188
Hypothetical protein.
       0.446
Noca_1196
PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein.
  
     0.441
Noca_2583
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein.
 
  
 0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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