STRINGSTRING
Noca_2186 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2186" - Regulatory protein TetR in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2186Regulatory protein TetR (237 aa)    
Predicted Functional Partners:
Noca_2185
Luciferase family protein (345 aa)
              0.859
Noca_2184
Integral membrane protein (117 aa)
              0.703
Noca_2188
Hypothetical protein (197 aa)
              0.626
Noca_2187
Hypothetical protein (260 aa)
              0.626
Noca_2183
Alcohol dehydrogenase (311 aa)
              0.560
Noca_2182
NmrA family protein (213 aa)
              0.497
Noca_2181
NmrA family protein (284 aa)
              0.459
Noca_4409
Hypothetical protein (274 aa)
   
          0.449
Noca_1011
4-carboxymuconolactone decarboxylase (402 aa)
   
          0.411
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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