Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_2194PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match). (218 aa)    
Predicted Functional Partners:
Noca_2192
Hypothetical protein; KEGG: sco:SCO5075 oxidoreductase.
 
   
 0.549
Noca_2193
PFAM: DoxX family protein; KEGG: nfa:nfa22160 hypothetical protein.
       0.532
Noca_3360
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06435 possible transcriptional regulator, TetR family.
  
     0.511
Noca_4400
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily.
 
  
 0.473
Noca_2678
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase.
  
     0.465
Noca_2677
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator.
  
   
 0.461
Noca_3387
KEGG: lxx:Lxx16280 putative iron-dependent peroxidase.
  
     0.460
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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