Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2199PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein. (276 aa)    
Predicted Functional Partners:
Noca_2202
PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein.
 
  
 0.900
Noca_2201
PFAM: ResB family protein; KEGG: sma:SAV4800 putative cytochrome c biogenesis membrane protein.
 
  
 0.881
Noca_2200
PFAM: cytochrome c assembly protein; KEGG: fra:Francci3_0513 cytochrome c assembly protein.
 
  
 0.871
Noca_0501
PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein.
 
  
 0.842
Noca_2203
PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
  
 0.802
Noca_0503
PFAM: ResB family protein; KEGG: sco:SCO4474 putative integral membrane protein.
 
  
 0.756
Noca_0504
PFAM: cytochrome c assembly protein; KEGG: pac:PPA0328 putative cytochrome c biogenesis protein.
 
  
 0.733
Noca_1959
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE.
 
  
 0.701
Noca_0341
PFAM: Redoxin domain protein; KEGG: pac:PPA0224 hypothetical protein.
 
  
 0.637
Noca_0496
uroporphyrinogen-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sco:SCO3317 putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase.
  
    0.454
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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