Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2212KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter. (528 aa)    
Predicted Functional Partners:
Noca_2211
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein.
 
 
 0.971
Noca_1665
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component.
 
 
 0.878
Noca_2559
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein.
 
 
 0.878
Noca_0479
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component.
 
  
 0.602
Noca_0478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa19890 putative ABC transporter ATP-binding protein.
 
 
 0.600
Noca_1482
KEGG: rha:RHA1_ro04496 ABC transporter, ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.591
Noca_2210
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2345 methyltransferase type 11.
       0.589
Noca_4447
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein.
 
 
 0.550
Noca_4445
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3956 putative ABC transporter ATP-binding protein.
 
 
 0.540
Noca_2213
PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein.
       0.498
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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