STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2213PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Noca_4008
PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein.
  
     0.766
Noca_0315
PFAM: protein of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein.
  
     0.760
Noca_2211
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4541 putative ABC transporter ATP-binding protein.
       0.498
Noca_2212
KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter.
       0.498
Noca_2209
PFAM: regulatory protein, ArsR; KEGG: nfa:pnf1320 putative transcriptional regulator.
 
     0.439
Noca_2207
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nfa:pnf1330 putative cation-transporting ATPase.
 
  
 0.432
Noca_2197
PFAM: alkylmercury lyase; KEGG: nfa:pnf2590 putative alkylmercury lyase.
 
     0.411
Noca_3111
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: rxy:Rxyl_1314 arsenite-activated ATPase (ArsA); TC 3.A.4.1.1.
  
     0.409
Noca_2208
KEGG: nfa:pnf1320 putative transcriptional regulator.
 
     0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.