Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_2214KEGG: pfl:PFL_2399 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Noca_2216
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: nfa:nfa52310 putative cation transporter.
       0.568
Noca_2215
PFAM: regulatory protein, ArsR; KEGG: nfa:nfa26300 putative transcriptional regulator.
       0.562
Noca_0316
PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein.
  
     0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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