Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_2220PFAM: SAF domain; KEGG: rha:RHA1_ro10043 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Noca_2224
PFAM: type II secretion system protein; KEGG: rha:RHA1_ro10047 hypothetical protein.
 
    0.962
Noca_2223
PFAM: type II secretion system protein; KEGG: sma:SAV186 integral membrane protein.
 
    0.961
Noca_2221
KEGG: sma:SAV184 hypothetical protein.
 
    0.953
Noca_2226
PFAM: TadE family protein; KEGG: sco:SCP1.173 hypothetical protein.
 
    0.917
Noca_2227
PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein.
 
    0.917
Noca_2222
PFAM: type II secretion system protein E; KEGG: rha:RHA1_ro10045 possible type II/IV secretion system protein.
 
    0.916
Noca_2229
PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCP1.176 putative large membrane protein.
 
     0.905
Noca_2228
PFAM: TadE family protein; KEGG: sco:SCP1.175 hypothetical protein.
 
     0.903
Noca_2232
KEGG: sco:SCP1.166 putative atp/gtp-binding protein.
 
     0.894
Noca_1543
PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein.
 
    0.862
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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