STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2222PFAM: type II secretion system protein E; KEGG: rha:RHA1_ro10045 possible type II/IV secretion system protein. (559 aa)    
Predicted Functional Partners:
Noca_2223
PFAM: type II secretion system protein; KEGG: sma:SAV186 integral membrane protein.
 
  
 0.946
Noca_2224
PFAM: type II secretion system protein; KEGG: rha:RHA1_ro10047 hypothetical protein.
 
  
 0.946
Noca_2220
PFAM: SAF domain; KEGG: rha:RHA1_ro10043 hypothetical protein.
 
    0.919
Noca_2221
KEGG: sma:SAV184 hypothetical protein.
 
     0.910
Noca_3118
PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein.
 
  
 0.870
Noca_2227
PFAM: TadE family protein; KEGG: sma:SAV190 hypothetical protein.
 
  
 0.868
Noca_2226
PFAM: TadE family protein; KEGG: sco:SCP1.173 hypothetical protein.
 
  
 0.866
Noca_3117
PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein.
 
  
 0.865
Noca_1543
PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein.
 
  
 0.815
Noca_2229
PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCP1.176 putative large membrane protein.
 
     0.813
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.