STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2244PFAM: peptidase M23B; KEGG: lxx:Lxx15390 lipoprotein. (1048 aa)    
Predicted Functional Partners:
Noca_2243
KEGG: sco:SCO6878 ATP-binding protein.
       0.697
Noca_2242
KEGG: sco:SCO6880 lipoprotein.
       0.687
Noca_0326
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA.
 
   
 0.605
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.596
Noca_2245
Hypothetical protein.
       0.572
Noca_2241
KEGG: sco:SCO6881 ATP-binding protein.
  
  
 0.556
Noca_3345
PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase.
 
     0.546
Noca_4676
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein.
 
   
 0.539
Noca_2238
Hypothetical protein.
       0.513
Noca_2239
Hypothetical protein.
       0.513
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.