Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_2296PFAM: RDD domain containing protein; KEGG: pac:PPA0672 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Noca_2297
Hypothetical protein.
 
     0.805
Noca_2295
KEGG: pac:PPA0671 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.
  
 
 0.684
Noca_3469
KEGG: sma:SAV5453 hypothetical protein.
  
     0.607
Noca_3139
Conserved hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.568
Noca_3136
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pac:PPA0711 ubiquinol-cytochrome c reductase iron-sulfur subunit.
 
     0.546
Noca_2946
KEGG: sco:SCO5843 hypothetical protein.
  
     0.519
Noca_2458
KEGG: sco:SCO1602 hypothetical protein.
  
    0.513
Noca_3135
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
  
     0.508
Noca_0374
PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sma:SAV4618 rRNA or tRNA methyltransferase; Belongs to the methyltransferase superfamily.
 
     0.476
Noca_1435
KEGG: lxx:Lxx05370 lipoprotein.
  
    0.473
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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