Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2297Hypothetical protein. (300 aa)    
Predicted Functional Partners:
Noca_2296
PFAM: RDD domain containing protein; KEGG: pac:PPA0672 hypothetical protein.
 
     0.805
Noca_4433
KEGG: mbo:Mb3126c hypothetical protein.
  
     0.525
Noca_2295
KEGG: pac:PPA0671 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.
       0.485
Noca_3008
PFAM: GCN5-related N-acetyltransferase.
  
     0.478
Noca_4566
PFAM: Abortive infection protein; KEGG: mpa:MAP2640c hypothetical protein.
  
     0.454
Noca_1529
KEGG: sma:SAV3056 hypothetical protein.
  
     0.433
Noca_0246
KEGG: sco:SCO0502 hypothetical protein.
  
     0.425
Noca_0307
TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein.
  
     0.413
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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