STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2298KEGG: pac:PPA0683 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Noca_2911
KEGG: sma:SAV2403 hypothetical protein.
  
     0.764
rbpA-2
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.762
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
       0.761
Noca_3153
KEGG: sco:SCO2169 integral membrane protein.
 
     0.759
Noca_2394
PFAM: protein of unknown function DUF349; KEGG: pac:PPA1167 putative ATPase involved in DNA repair.
  
     0.753
Noca_2710
SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator.
  
     0.752
Noca_3675
KEGG: sma:SAV2229 hypothetical protein.
  
     0.737
Noca_1525
KEGG: sma:SAV3061 hypothetical protein.
  
     0.726
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.704
Noca_0008
KEGG: sma:SAV4323 hypothetical protein.
  
     0.703
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.