STRINGSTRING
Noca_2329 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2329" - DEAD/DEAH box helicase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2329DEAD/DEAH box helicase (1516 aa)    
Predicted Functional Partners:
Noca_2328
formamidopyrimidine-DNA glycosylase (268 aa)
 
        0.957
Noca_0907
ATP-dependent DNA ligase (366 aa)
 
          0.547
Noca_3482
formamidopyrimidine-DNA glycosylase (282 aa)
 
        0.530
Noca_1235
ATP dependent DNA ligase (311 aa)
 
          0.527
Noca_2271
ATP dependent DNA ligase (318 aa)
 
          0.522
Noca_2330
Hypothetical protein (171 aa)
              0.520
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (509 aa)
 
          0.519
Noca_2841
Hypothetical protein (313 aa)
 
          0.433
Noca_1508
UvrD/REP helicase (1060 aa)
 
 
  0.429
Noca_1509
UvrD/REP helicase (1073 aa)
 
 
  0.422
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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