Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2333KEGG: sma:SAV5428 hypothetical protein. (420 aa)    
Predicted Functional Partners:
Noca_1886
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: nfa:nfa13820 putative DNA-binding protein.
  
    0.671
Noca_0885
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV7030 transmembrane efflux protein.
   
  
 0.614
Noca_3278
PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV6301 antibiotic transport protein.
   
  
 0.614
Noca_3926
PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2022 major facilitator superfamily (MFS) multidrug efflux pump.
   
  
 0.614
Noca_4322
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein.
   
  
 0.614
Noca_4618
PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04995 probable multidrug resistance transporter, MFS superfamily.
   
  
 0.614
Noca_2480
TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: sco:SCO1782 putative membrane protein.
      
 0.605
Noca_1301
PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_5114 isochorismatase hydrolase.
     
 0.569
Noca_2334
PFAM: protein of unknown function DUF1006; KEGG: mlo:mlr1373 hypothetical protein.
       0.557
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.556
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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