STRINGSTRING
Noca_2335 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2335" - Endoribonuclease L-PSP in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2335Endoribonuclease L-PSP (127 aa)    
Predicted Functional Partners:
Noca_2336
Hypothetical protein (144 aa)
              0.767
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (242 aa)
       
    0.662
Noca_4599
Elongation factor G (701 aa)
     
  0.590
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (703 aa)
     
  0.590
Noca_2055
4-oxalocrotonate decarboxylase (259 aa)
 
   
    0.580
Noca_2340
Methylthioadenosine phosphorylase (264 aa)
   
        0.573
Noca_2337
Type 12 methyltransferase (440 aa)
              0.563
Noca_2339
Major facilitator transporter (421 aa)
              0.561
Noca_2338
Hypothetical protein (64 aa)
              0.561
Noca_3562
Cytochrome P450 (451 aa)
 
          0.550
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (6%) [HD]