STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2339PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa33380 putative transporter. (421 aa)    
Predicted Functional Partners:
Noca_2338
KEGG: sma:SAV2495 hypothetical protein.
       0.838
Noca_2337
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro01206 hypothetical protein.
     
 0.788
Noca_2340
Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
       0.773
Noca_2336
KEGG: rha:RHA1_ro05054 hypothetical protein.
 
     0.592
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.570
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.538
Noca_2335
PFAM: Endoribonuclease L-PSP; KEGG: fra:Francci3_4440 endoribonuclease L-PSP.
       0.486
Noca_3704
KEGG: nfa:nfa53760 hypothetical protein.
  
     0.468
Noca_2343
PFAM: phosphoribosyltransferase; KEGG: cgb:cg1659 purine phosphoribosyltransferase.
       0.451
Noca_2344
PFAM: GCN5-related N-acetyltransferase; KEGG: sth:STH2617 aminoglycoside 6'-N-acetyltransferase.
       0.447
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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