Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_2345PFAM: protein of unknown function DUF344; KEGG: mmc:Mmcs_0639 protein of unknown function DUF344. (283 aa)    
Predicted Functional Partners:
Noca_2346
KEGG: rxy:Rxyl_2213 hypothetical protein.
       0.803
Noca_2347
KEGG: sco:SCO1348 hypothetical protein.
       0.803
Noca_2343
PFAM: phosphoribosyltransferase; KEGG: cgb:cg1659 purine phosphoribosyltransferase.
       0.787
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.786
Noca_2344
PFAM: GCN5-related N-acetyltransferase; KEGG: sth:STH2617 aminoglycoside 6'-N-acetyltransferase.
       0.779
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.774
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.741
Noca_1898
Coproporphyrinogen III oxidase, anaerobic; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.518
Noca_2340
Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
       0.458
Noca_2337
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro01206 hypothetical protein.
     
 0.447
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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