STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2355PFAM: TrkA-N domain protein; Ion transport 2 domain protein,; KEGG: pac:PPA1165 ion channel membrane protein. (366 aa)    
Predicted Functional Partners:
Noca_2354
PFAM: ribonuclease BN; KEGG: sma:SAV2122 integral membrane protein, ribonuclease BN-like family.
     
 0.772
Noca_2443
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sco:SCO1472 conserved hypothetical Sun-family protein SCL6.29c; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.685
Noca_1427
KEGG: pac:PPA1688 hypothetical protein.
  
   
 0.680
Noca_1526
PFAM: molybdopterin biosynthesis MoaE; KEGG: sma:SAV3059 putative molybdopterin biosynthesis protein E.
   
    0.606
Noca_2356
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dra:DR2419 sensory box sensor histidine kinase.
  
  
 0.591
Noca_2353
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV2123 putative acyl-CoA dehydrogenase.
       0.558
Noca_0449
KEGG: sco:SCO3402 secreted protein.
  
     0.533
Noca_4520
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro05623 sensor kinase, two-component system.
 
     0.516
Noca_1062
PFAM: protein of unknown function DUF1707; KEGG: sma:SAV5183 hypothetical protein.
 
    0.507
Noca_4675
KEGG: sco:SCO3902 integral membrane protein.
  
     0.506
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.