STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2365PFAM: HipA domain protein; KEGG: noc:Noca_2931 hypothetical protein. (411 aa)    
Predicted Functional Partners:
Noca_2364
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: plu:plu2127 hypothetical protein.
 
 
 
 0.995
Noca_3570
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein.
 
 
 0.533
Noca_2672
PFAM: helix-turn-helix domain protein; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sco:SCO5998 putative UDP-N-acetylglucosamine transferase.
  
 
 0.487
Noca_2363
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mmc:Mmcs_3405 alcohol dehydrogenase GroES-like protein.
       0.447
Noca_0947
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO0174 putative DNA-binding protein.
  
 
 0.418
Noca_0073
PFAM: helix-turn-helix domain protein; KEGG: nfa:nfa13110 putative DNA-binding protein.
  
 
 0.417
Noca_1722
PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family.
  
 
 0.417
Noca_2176
PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro11274 possible repressor protein, helix-turn-helix family.
  
 
 0.417
Noca_2219
PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro08679 possible repressor protein.
  
 
 0.417
Noca_2325
PFAM: helix-turn-helix domain protein; KEGG: tfu:Tfu_0798 helix-turn-helix motif.
  
 
 0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.