STRINGSTRING
Noca_2445 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2445" - Putative DNA ligase in Nocardioides sp. JS614
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
Noca_2445Putative DNA ligase (ATP), C-terminal (326 aa)    
Predicted Functional Partners:
Noca_1235
ATP dependent DNA ligase (311 aa)
 
 
  0.989
Noca_0907
ATP-dependent DNA ligase (366 aa)
 
  0.937
Noca_2271
ATP dependent DNA ligase (318 aa)
 
 
  0.922
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (509 aa)
 
 
  0.898
ku
DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (331 aa)
 
   
  0.892
Noca_2446
Ribulose-phosphate 3-epimerase (220 aa)
              0.845
Noca_1965
Hypothetical protein (282 aa)
 
          0.566
Noca_0728
Hypothetical protein (334 aa)
 
          0.519
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (161 aa)
              0.419
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (426 aa)
              0.419
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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