STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2446PFAM: ribulose-phosphate 3-epimerase; KEGG: sco:SCO1464 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (220 aa)    
Predicted Functional Partners:
Noca_4222
PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit.
 
 0.994
Noca_2541
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rha:RHA1_ro07186 transketolase; Belongs to the transketolase family.
 0.985
Noca_4221
Transketolase subunit B; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: lmf:LMOf2365_1054 transketolase, C-terminal subunit, putative.
 
 
 0.943
Noca_3483
Ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: sma:SAV5426 putative ribose-5-phosphate isomerase.
  
 
 0.930
Noca_1655
PFAM: carbohydrate kinase, FGGY; KEGG: mxa:MXAN_2879 putative xylulokinase.
 
 0.921
Noca_3313
PFAM: carbohydrate kinase, FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; Belongs to the FGGY kinase family.
 
 0.920
Noca_3685
PFAM: carbohydrate kinase, FGGY; KEGG: mmc:Mmcs_2422 carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
 
 0.920
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase.
 
 0.919
araB
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: pac:PPA2319 ribulokinase.
   
 0.917
Noca_3184
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
  
  
 0.917
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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