Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2498PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: mpa:MAP2474c hypothetical protein. (173 aa)    
Predicted Functional Partners:
Noca_0257
PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: sma:SAV7465 hypothetical protein.
  
     0.767
Noca_1410
LPPG:FO 2-phospho-L-lactate transferase; TIGRFAM: LPPG; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sco:SCO3036 LPPG:FO 2-phopspho-L-lactate transferase.
 
   
 0.720
Noca_3625
KEGG: mmc:Mmcs_3326 luciferase-like protein.
  
   
 0.719
Noca_2731
PFAM: luciferase family protein; KEGG: rha:RHA1_ro04686 probable 5,10-methylenetetrahydromethanopterin reductase.
  
   
 0.710
Noca_0813
PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase.
  
   
 0.685
Noca_3612
PFAM: luciferase family protein; KEGG: tfu:Tfu_0980 putative oxidoreductase.
  
   
 0.685
Noca_2313
PFAM: luciferase family protein; KEGG: rha:RHA1_ro04019 probable alkanesulfonate monooxygenase.
  
   
 0.670
Noca_1409
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein.
  
   
 0.660
Noca_2683
PFAM: luciferase family protein; KEGG: nfa:nfa22130 putative monooxygenase.
  
   
 0.637
Noca_4065
PFAM: luciferase family protein; KEGG: mmc:Mmcs_3213 luciferase-like protein.
  
   
 0.628
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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