STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2545PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1928 putative ABC transporter, ATP-binding subunit. (315 aa)    
Predicted Functional Partners:
Noca_2544
PFAM: ABC-2 type transporter; KEGG: sco:SCO1929 putative integral membrane transport protein.
 
  
 0.950
Noca_2543
PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly.
     
 0.798
Noca_2546
Hypothetical protein; KEGG: sil:SPO0301 glycerophosphoryl diester phosphodiesterase family protein.
  
  
 0.645
Noca_2547
PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein.
  
    0.644
mshC
cysteinyl-tRNA synthetase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
  
   
 0.608
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.581
Noca_1483
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component.
  
 0.553
Noca_1016
Cysteine--tRNA ligase; PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase.
  
   
 0.549
Noca_0121
PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit.
 
  
 0.508
Noca_1719
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DR2404 ABC transporter, ATP-binding protein, MsbA family.
 
0.448
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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