STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2547PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein. (251 aa)    
Predicted Functional Partners:
Noca_2546
Hypothetical protein; KEGG: sil:SPO0301 glycerophosphoryl diester phosphodiesterase family protein.
       0.774
Noca_1776
KEGG: sco:SCO4438 integral membrane protein.
 
   
 0.712
Noca_2544
PFAM: ABC-2 type transporter; KEGG: sco:SCO1929 putative integral membrane transport protein.
 
    0.687
Noca_2543
PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly.
  
    0.649
Noca_2545
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1928 putative ABC transporter, ATP-binding subunit.
  
    0.644
Noca_1531
PFAM: major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_A1561 light regulation of gametogenesis6 protein.
  
     0.523
Noca_2548
KEGG: rxy:Rxyl_1180 hypothetical protein.
       0.503
Noca_1262
KEGG: bxe:Bxe_A2026 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.422
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.