STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2555TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fra:Francci3_1665 SUF system FeS assembly protein. (150 aa)    
Predicted Functional Partners:
Noca_2553
KEGG: pac:PPA1546 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.998
Noca_2554
TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: sma:SAV6329 putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.995
Noca_2551
Iron-regulated ABC transporter permease protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sco:SCO1924 hypothetical protein.
 
  
 0.994
Noca_2556
PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_1666 protein of unknown function DUF59.
 
    0.994
Noca_3142
Cysteine desulfurase; PFAM: aminotransferase, class V; KEGG: sco:SCO2157 aminotransferase.
  
 0.986
Noca_3446
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sma:SAV2756 putative pyridoxal-phosphate-dependent aminotransferase.
  
 0.986
Noca_2550
Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sco:SCO1925 hypothetical protein.
 
  
 0.982
Noca_3438
Cysteine desulfurase; PFAM: aminotransferase, class V; KEGG: rha:RHA1_ro04390 probable cysteine desulfurase.
 
 
 0.964
Noca_3807
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: sco:SCO1054 aminotransferase.
 
 
 0.946
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.924
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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