Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_2579PFAM: protein of unknown function DUF81; KEGG: nfa:nfa3090 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Noca_2578
PFAM: band 7 protein; KEGG: sma:SAV6482 secreted protein.
       0.818
Noca_2577
PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 putative integral membrane protein.
       0.723
Noca_2576
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa42910 putative ABC transporter ATP-binding protein.
       0.610
Noca_0959
PFAM: protein of unknown function DUF81; KEGG: sco:SCO2485 hypothetical protein.
  
     0.570
Noca_2575
KEGG: sma:SAV6479 hypothetical protein.
       0.509
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.439
Noca_2574
KEGG: sco:SCO1808 putative phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3.
       0.413
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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