STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2607TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily. (399 aa)    
Predicted Functional Partners:
Noca_4161
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pac:PPA0069 UDP-glucose 4-epimerase.
 
 
 0.983
Noca_3398
PFAM: Aldose 1-epimerase; KEGG: tfu:Tfu_1083 putative aldose-1-epimerase.
 
 0.975
Noca_2454
PFAM: Aldose 1-epimerase; KEGG: fal:FRAAL2426 putative aldose-1-epimerase.
  
 0.972
Noca_3992
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sru:SRU_0347 oxidoreductase family, NAD-binding Rossmann fold domain protein.
 
 
 0.771
Noca_3184
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
     
 0.744
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
      
 0.705
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase.
 
  
 0.704
Noca_0954
PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.669
Noca_4211
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pac:PPA0136 NAD-dependent dehydrogenase.
  
 
 0.646
Noca_2954
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
 
  
 0.604
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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