STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2663KEGG: sth:STH37 lysine 5,6-aminomutase alpha subunit. (526 aa)    
Predicted Functional Partners:
Noca_2664
Beta-lysine 5,6-aminomutase beta subunit / D-lysine 5,6-aminomutase beta subunit; PFAM: cobalamin B12-binding domain protein; KEGG: rfr:Rfer_3887 cobalamin B12-binding.
  
  0.999
Noca_2662
KEGG: sth:STH34 Zn-dependent alcohol dehydrogenase and related dehydrogenase.
 
 
 0.996
Noca_2661
L-lysine 2,3-aminomutase; PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_4699 putative L-lysine 2,3-aminomutase.
 
  
 0.989
Noca_2665
3-aminobutyryl-CoA ammonia-lyase; KEGG: rha:RHA1_ro05324 possible acyl-CoA hydrolase.
 
   
 0.957
Noca_0426
PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein.
    
  0.917
Noca_4226
3-keto-5-aminohexanoate cleavage enzyme; PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein.
 
   
 0.791
Noca_0977
KEGG: dsy:DSY3235 hypothetical protein.
 
     0.784
Noca_2631
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.651
Noca_1172
PFAM: protein of unknown function DUF849; KEGG: bcn:Bcen_4033 protein of unknown function DUF849.
 
   
 0.605
Noca_0544
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 
 0.549
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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