STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2675PFAM: pentapeptide repeat protein. (250 aa)    
Predicted Functional Partners:
Noca_0898
KEGG: fra:Francci3_0932 hypothetical protein.
  
     0.730
Noca_0019
KEGG: fra:Francci3_0932 hypothetical protein.
 
     0.704
Noca_2867
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.
 
   
 0.654
Noca_2592
KEGG: mmc:Mmcs_4977 hypothetical protein.
  
     0.558
Noca_1017
KEGG: mmc:Mmcs_1202 hypothetical protein.
  
     0.537
Noca_2371
PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC0816 acetyltransferase, GNAT family.
  
     0.532
Noca_3233
PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase.
  
     0.513
Noca_4670
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sco:SCO6995 protease.
  
     0.510
Noca_2174
PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type.
  
     0.480
Noca_4672
PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.480
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.