STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2745KEGG: nfa:nfa5080 putative CoA transferase beta subunit. (256 aa)    
Predicted Functional Partners:
Noca_2744
PFAM: coenzyme A transferase; KEGG: sma:SAV6202 putative glutaconate CoA-transferase, subunit A.
 
 
 0.999
Noca_2743
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpa:MAP0516c enoyl-CoA hydratase.
 
 0.976
Noca_2746
PFAM: 2-nitropropane dioxygenase, NPD; KEGG: mmc:Mmcs_4686 2-nitropropane dioxygenase, NPD.
 
    0.961
Noca_2742
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04653 short chain dehydrogenase.
 
 
 0.880
Noca_0330
3-oxoacid CoA-transferase, A subunit; KEGG: fal:FRAAL3148 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (succinyl CoA:3-oxoacid CoA-transferase) (OXCT A); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.824
Noca_1014
KEGG: mmc:Mmcs_1702 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.824
Noca_2733
KEGG: mmc:Mmcs_4635 lipid-transfer protein.
 
  
 0.817
Noca_2734
PFAM: peptidase M22, glycoprotease; KEGG: nfa:nfa5210 putative lipid-transfer protein.
 
  
 0.816
Noca_2786
KEGG: nfa:nfa4530 lipid-transfer protein.
 
  
 0.810
Noca_2766
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6197 putative oxidoreductase.
 
 
 0.791
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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