Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2747KEGG: rxy:Rxyl_3099 hypothetical protein. (220 aa)    
Predicted Functional Partners:
Noca_1949
KEGG: rde:RD1_2353 hypothetical protein.
  
     0.714
Noca_2947
KEGG: sme:SMb20814 hypothetical protein.
 
     0.692
Noca_3771
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase.
  
     0.559
Noca_2748
KEGG: tma:TM0599 hypothetical protein.
       0.542
Noca_2749
Hypothetical protein.
       0.542
Noca_2750
Hypothetical protein.
       0.488
Noca_3051
PFAM: GCN5-related N-acetyltransferase; Chorismate mutase; KEGG: sco:SCO1988 hypothetical protein.
  
     0.429
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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