STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2783KEGG: rha:RHA1_ro00985 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Noca_2782
PFAM: protein of unknown function DUF480; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_1185 protein of unknown function DUF480; Belongs to the UPF0502 family.
       0.773
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.716
Noca_2784
PFAM: protein of unknown function DUF344; KEGG: mbo:Mb3261c possible transcriptional regulatory protein PvdS (probable RNA polymerase sigma factor).
 
     0.617
Noca_2785
KEGG: mpa:MAP2690c hypothetical protein.
 
     0.585
Noca_3414
TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sco:SCO1245 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.554
Noca_2043
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_4099 methyltransferase type 11.
 
     0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.