STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2787PFAM: MaoC domain protein dehydratase; KEGG: mmc:Mmcs_4673 MaoC-like dehydratase. (126 aa)    
Predicted Functional Partners:
Noca_2788
PFAM: protein of unknown function DUF35; KEGG: nfa:nfa4510 hypothetical protein.
 
 0.998
Noca_2789
KEGG: nfa:nfa4510 hypothetical protein.
 
 0.998
Noca_2786
KEGG: nfa:nfa4530 lipid-transfer protein.
 
 
 0.960
Noca_0843
PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein.
 
 
 0.951
Noca_2790
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04485 probable acyl-CoA dehydrogenase.
 
 0.939
Noca_4072
PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro05826 hypothetical protein.
 
 
 0.909
Noca_2733
KEGG: mmc:Mmcs_4635 lipid-transfer protein.
 
 
 0.855
Noca_2517
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04693 acyl-CoA dehydrogenase.
 
 0.850
Noca_2795
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04483 possible acyl-CoA dehydrogenase.
 
 0.848
Noca_2734
PFAM: peptidase M22, glycoprotease; KEGG: nfa:nfa5210 putative lipid-transfer protein.
 
 
 0.844
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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