Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Noca_2789KEGG: nfa:nfa4510 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Noca_2787
PFAM: MaoC domain protein dehydratase; KEGG: mmc:Mmcs_4673 MaoC-like dehydratase.
 0.999
Noca_2788
PFAM: protein of unknown function DUF35; KEGG: nfa:nfa4510 hypothetical protein.
  
  0.999
Noca_2786
KEGG: nfa:nfa4530 lipid-transfer protein.
 
 0.996
Noca_2790
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rha:RHA1_ro04485 probable acyl-CoA dehydrogenase.
 
 
 0.990
Noca_2733
KEGG: mmc:Mmcs_4635 lipid-transfer protein.
 
 
 0.896
Noca_2734
PFAM: peptidase M22, glycoprotease; KEGG: nfa:nfa5210 putative lipid-transfer protein.
 
 
 0.890
Noca_2800
PFAM: regulatory protein, TetR; KEGG: nfa:nfa4470 putative transcriptional regulator.
 
     0.785
Noca_2732
PFAM: protein of unknown function DUF35; KEGG: nfa:nfa5230 hypothetical protein.
  
   
 0.782
Noca_2517
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04693 acyl-CoA dehydrogenase.
 
  
 0.773
Noca_2518
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha-hydroxylase, oxygenase.
 
    0.773
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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