STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2799PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro04656 probable phosphatidylinositol alpha-mannosyltransferase. (421 aa)    
Predicted Functional Partners:
Noca_2797
KEGG: mmc:Mmcs_5100 hypothetical protein.
 
     0.950
Noca_2798
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04657 possible methyltransferase.
 
     0.950
Noca_2796
KEGG: tfu:Tfu_0569 hypothetical protein.
 
    0.785
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.654
Noca_0267
Maltooligosyl trehalose hydrolase; KEGG: nfa:nfa18050 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.644
Noca_2800
PFAM: regulatory protein, TetR; KEGG: nfa:nfa4470 putative transcriptional regulator.
 
     0.570
Noca_1401
PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase.
  
  
 0.515
Noca_2801
KEGG: fra:Francci3_1080 hypothetical protein.
   
 
 0.481
Noca_1811
KEGG: sma:SAV2800 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35.
  
 
 0.470
Noca_1516
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase.
   
 
 0.468
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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