Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2800PFAM: regulatory protein, TetR; KEGG: nfa:nfa4470 putative transcriptional regulator. (201 aa)    
Predicted Functional Partners:
Noca_2787
PFAM: MaoC domain protein dehydratase; KEGG: mmc:Mmcs_4673 MaoC-like dehydratase.
 
   
 0.803
Noca_2789
KEGG: nfa:nfa4510 hypothetical protein.
 
     0.785
Noca_2732
PFAM: protein of unknown function DUF35; KEGG: nfa:nfa5230 hypothetical protein.
  
   
 0.775
Noca_2733
KEGG: mmc:Mmcs_4635 lipid-transfer protein.
 
  
 0.765
Noca_2518
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha-hydroxylase, oxygenase.
 
   
 0.737
Noca_2745
KEGG: nfa:nfa5080 putative CoA transferase beta subunit.
  
     0.730
Noca_2734
PFAM: peptidase M22, glycoprotease; KEGG: nfa:nfa5210 putative lipid-transfer protein.
 
  
 0.710
Noca_2795
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04483 possible acyl-CoA dehydrogenase.
 
   
 0.679
Noca_2798
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04657 possible methyltransferase.
 
 
   0.679
Noca_2744
PFAM: coenzyme A transferase; KEGG: sma:SAV6202 putative glutaconate CoA-transferase, subunit A.
  
   
 0.677
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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