Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Noca_2804PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMb21154 hypothetical protein, bleomycin resistance protein family. (133 aa)    
Predicted Functional Partners:
Noca_2803
Transcriptional regulator, ArsR family; PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: mmc:Mmcs_4520 transcriptional regulator, ArsR family.
 
  
 0.928
Noca_2805
PFAM: protein of unknown function UPF0060; KEGG: rha:RHA1_ro06609 hypothetical protein.
       0.773
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.539
Noca_2802
TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: nfa:nfa48950 putative peptide chain release factor.
       0.538
Noca_4374
KEGG: sco:SCO0378 conserved secreted protein.
  
    0.454
nuoD
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
    0.444
Noca_0990
KEGG: nfa:nfa28960 hypothetical protein.
 
    0.440
Noca_1275
PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL4597 putative DNA binding protein.
 
  
 0.436
Noca_0667
KEGG: nfa:nfa53170 hypothetical protein.
  
     0.434
Noca_1358
Hypothetical protein.
  
     0.428
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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