Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2805PFAM: protein of unknown function UPF0060; KEGG: rha:RHA1_ro06609 hypothetical protein. (111 aa)    
Predicted Functional Partners:
Noca_2803
Transcriptional regulator, ArsR family; PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: mmc:Mmcs_4520 transcriptional regulator, ArsR family.
     
 0.810
Noca_2804
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMb21154 hypothetical protein, bleomycin resistance protein family.
       0.773
Noca_2802
TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: nfa:nfa48950 putative peptide chain release factor.
       0.538
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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