STRINGSTRING
Noca_2809 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2809" - HNH endonuclease in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2809HNH endonuclease (255 aa)    
Predicted Functional Partners:
Noca_3219
HNH endonuclease (427 aa)
   
          0.738
Noca_4183
HNH endonuclease (434 aa)
   
          0.727
Noca_1406
Hypothetical protein (246 aa)
   
          0.726
Noca_2758
Hypothetical protein (441 aa)
   
          0.671
Noca_2810
Type 12 methyltransferase (207 aa)
              0.630
Noca_1256
TadE family protein (127 aa)
   
          0.615
Noca_3520
Hypothetical protein (314 aa)
   
          0.600
Noca_0119
Hypothetical protein (246 aa)
   
          0.586
Noca_4266
Hypothetical protein (350 aa)
   
          0.568
Noca_3125
Hypothetical protein (77 aa)
   
          0.562
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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