STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2812PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Noca_2815
KEGG: mmc:Mmcs_3697 hypothetical protein.
 
     0.852
Noca_2814
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa5340 putative short chain dehydrogenase.
 
    0.810
Noca_2813
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_B1012 short-chain dehydrogenase/reductase SDR.
  
    0.792
Noca_2816
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL1022 putative thioredoxin reductase.
     
 0.781
Noca_4568
PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.667
Noca_2825
PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein.
 
     0.654
Noca_2822
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein.
 
     0.652
Noca_2826
PFAM: protein of unknown function DUF140; KEGG: sco:SCO2421 putative ABC-transporter integral membrane protein.
 
     0.650
Noca_2823
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: rha:RHA1_ro01970 possible Mce family protein.
 
     0.649
Noca_2821
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein.
 
     0.647
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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