STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2833TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rha:RHA1_ro03575 anti-sigma factor antagonist, possible RsbV; Belongs to the anti-sigma-factor antagonist family. (111 aa)    
Predicted Functional Partners:
Noca_1923
PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor.
 
 
 0.992
Noca_2834
KEGG: mmc:Mmcs_0408 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.981
Noca_2832
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase, family 2; KEGG: rha:RHA1_ro03574 probable cellulose synthase catalytic subunit.
 
    0.945
Noca_2829
PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rha:RHA1_ro03573 anti-sigma factor, possible RsbU.
 
 
 0.900
Noca_1670
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase.
 
  
 0.882
Noca_1977
KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
  
 0.877
Noca_1695
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL0362 putative integral membrane protein.
 
 
 0.776
Noca_3481
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO2624 integral membrane protein.
 
 
 0.774
Noca_1716
KEGG: fal:FRAAL5991 anti-sigma factor (partial match).
  
 
 0.763
Noca_1138
KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.741
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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