STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2841KEGG: nfa:nfa56060 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Noca_2839
PFAM: Carboxymuconolactone decarboxylase; KEGG: nfa:nfa52610 hypothetical protein.
       0.779
Noca_2840
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: nfa:nfa26950 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.779
Noca_1079
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tfu:Tfu_0258 AP endonuclease, family 1:exodeoxyribonuclease III xth.
  
 0.764
Noca_2329
ATP dependent helicase, Lhr family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: fra:Francci3_3527 DEAD/DEAH box helicase-like.
 
  
 0.622
Noca_0907
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sma:SAV1697 putative DNA ligase.
 
  
 0.579
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
  
 0.553
Noca_2842
PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: mmc:Mmcs_3011 DNA polymerase I.
   
 
 0.544
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.511
Noca_2712
PFAM: regulatory protein, MerR; KEGG: rha:RHA1_ro00905 possible transcriptional regulator.
  
   
 0.508
Noca_0515
PFAM: beta-lactamase domain protein; KEGG: sma:SAV1967 hypothetical protein.
 
     0.477
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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