node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Noca_0002 | Noca_1235 | Noca_0002 | Noca_1235 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | 0.856 |
Noca_0002 | Noca_1522 | Noca_0002 | Noca_1522 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein. | 0.627 |
Noca_0002 | Noca_2842 | Noca_0002 | Noca_2842 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: mmc:Mmcs_3011 DNA polymerase I. | 0.949 |
Noca_0002 | lig | Noca_0002 | Noca_2845 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.856 |
Noca_0002 | polA | Noca_0002 | Noca_3006 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
Noca_1235 | Noca_0002 | Noca_1235 | Noca_0002 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.856 |
Noca_1235 | Noca_1237 | Noca_1235 | Noca_1237 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase. | 0.999 |
Noca_1235 | Noca_1522 | Noca_1235 | Noca_1522 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein. | 0.774 |
Noca_1235 | Noca_2445 | Noca_1235 | Noca_2445 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | KEGG: rha:RHA1_ro05237 possible DNA ligase (ATP), C-terminal. | 0.978 |
Noca_1235 | Noca_2842 | Noca_1235 | Noca_2842 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: mmc:Mmcs_3011 DNA polymerase I. | 0.585 |
Noca_1235 | Noca_3665 | Noca_1235 | Noca_3665 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | KEGG: sco:SCO6709 hypothetical protein. | 0.978 |
Noca_1235 | ku | Noca_1235 | Noca_1234 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.946 |
Noca_1235 | lig | Noca_1235 | Noca_2845 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.770 |
Noca_1235 | polA | Noca_1235 | Noca_3006 | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.763 |
Noca_1237 | Noca_1235 | Noca_1237 | Noca_1235 | KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase. | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | 0.999 |
Noca_1237 | ku | Noca_1237 | Noca_1234 | KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.966 |
Noca_1237 | lig | Noca_1237 | Noca_2845 | KEGG: mmc:Mmcs_4352 ATP dependent DNA ligase. | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.780 |
Noca_1522 | Noca_0002 | Noca_1522 | Noca_0002 | PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.627 |
Noca_1522 | Noca_1235 | Noca_1522 | Noca_1235 | PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein. | PFAM: ATP dependent DNA ligase; KEGG: fal:FRAAL4382 hypothetical protein. | 0.774 |
Noca_1522 | Noca_2445 | Noca_1522 | Noca_2445 | PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein. | KEGG: rha:RHA1_ro05237 possible DNA ligase (ATP), C-terminal. | 0.485 |