Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2871PFAM: protein of unknown function DUF77; KEGG: cdi:DIP1058 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Noca_2872
Hypothetical protein.
       0.564
Noca_2870
PFAM: protein of unknown function UPF0047; KEGG: fra:Francci3_3056 protein of unknown function UPF0047.
       0.470
Noca_1900
KEGG: mmc:Mmcs_2324 hypothetical protein.
 
     0.409
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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