STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2873PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV6340 RNA polymerase ECF-subfamily sigma factor. (171 aa)    
Predicted Functional Partners:
Noca_2874
Hypothetical protein.
       0.788
Noca_3765
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor.
  
   
 0.619
Noca_1676
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.563
Noca_0489
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4735 RNA polymerase ECF-subfamily sigma factor.
  
   
 0.544
Noca_4685
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4303 putative RNA polymerase ECF-subfamily sigma factor.
  
   
 0.519
Noca_2875
PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: mtc:MT3905 IS1557, transposase.
       0.495
Noca_0488
KEGG: sma:SAV4734 hypothetical protein.
   
   0.490
Noca_4499
PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0455 sigma subunit sigma24 -like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.439
Noca_3673
Lipoprotein; KEGG: sma:SAV2224 lipoprotein.
 
 
 0.422
Noca_1706
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV3038 putative RNA polymerase ECF-subfamily sigma factor.
  
   
 0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.