STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2900Hypothetical protein. (257 aa)    
Predicted Functional Partners:
Noca_2899
Hypothetical protein.
       0.807
Noca_2901
23S rRNA m(5)U-1939 methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: sma:SAV2389 putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.604
Noca_2902
Amino acid/polyamine/organocation transporter, APC superfamily; KEGG: nfa:nfa37450 putative transporter; TC 2.A.3.
       0.604
Noca_2903
PFAM: TrkA-N domain protein; KEGG: sma:SAV2391 putative potassium transporter.
       0.443
Noca_2904
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pac:PPA1057 Trk system potassium uptake protein.
       0.443
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.