STRINGSTRING
Noca_2901 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2901" - Deoxyribonuclease in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2901Deoxyribonuclease (413 aa)    
Predicted Functional Partners:
Noca_2902
Putative transporter (685 aa)
   
        0.915
Noca_2601
tRNA/rRNA methyltransferase SpoU (267 aa)
   
 
  0.869
Noca_2903
TrkA domain-containing protein (220 aa)
   
        0.792
Noca_2904
TrkA domain-containing protein (223 aa)
   
        0.791
Noca_3504
Maf protein (203 aa)
        0.757
Noca_0939
Cystathionine beta-synthase (462 aa)
   
      0.738
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (268 aa)
   
   
  0.713
Noca_4307
Cysteine synthase (309 aa)
   
      0.700
Noca_1312
Cysteine synthase (320 aa)
   
      0.700
Noca_2443
Fmu (Sun) domain-containing protein (472 aa)
   
 
  0.684
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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